Controller - San Diego, CA

Controller for Nonprofit Organizations

Your Part‑Time Controller, LLC (YPTC) is a national leader in providing outsourced accounting services to nonprofit organizations. We are among the fastest growing accounting firms in the U.S. and have been nationally recognized as the Best Place to Work for 2025. We offer a hybrid work environment, a flexible schedule, a comprehensive benefits program, professional education opportunities, competitive compensation, a 35‑hour full‑time week, and a people‑focused culture with genuine support inside and outside of work.

• Serve as the outsourced Controller/CFO for multiple non‑profit clients.
• Transform nonprofit client financial departments to help them meet their mission.
• Prepare financial reporting for management and board decision‑making and presentations.
• Recommend and implement improvements to accounting, operations, internal controls, and compliance policies and procedures, supporting client strategy and best practices.
• Handle transactional activities, including accounts payable, accounts receivable (revenue recognition and billing), payroll, general accounting, reconciliations, month‑end close, and maintaining work papers.
• Provide analysis and data visualization, budgeting and forecasting.
• Manage grant allocations and funder reporting.
• Prepare for and manage the annual audit.
• Provide client and staff training opportunities.

• Passionate about working in or supporting nonprofit organizations.
• Bachelor’s Degree required, preferably in Accounting or Finance.
• 5–7+ years of accounting experience.
• Experience working in a remote environment preferred.
• Ability to manage and lead multiple clients, work independently, and respond timely.
• Strong Microsoft Excel skills.
• Experience with multiple GL packages, especially Quick Books, and electronic bill‑pay systems.
• Non‑profit accounting, public accounting, and/or consulting experience is a plus.
• CPA certification is a plus.
• Bilingual English/Spanish is a plus.
• Customized cover letter explaining interest and qualifications for this role is required.

• A Best Place to Work recognized by Inc. Magazine and Accounting Today.
• Mission‑driven purpose serving nonprofit organizations.
• A supportive culture enabling staff to succeed.
• Unlimited opportunities for professional growth.
• Competitive compensation.
• Work‑life balance: full‑time and part‑time positions available.
• Standard 35‑hour full‑time week, with eligibility for paid overtime for non‑exempt employees.
• For full‑time positions: 4 weeks paid time off (generally 100 hours paid vacation), 9 paid holidays, full benefits package (medical, dental, vision, life insurance and supplementary options), very generous employer contributions to medical insurance premiums.
• For part‑time positions: pro‑rated vacation and sick time based on hours worked, eligibility for supplementary benefit options.
• 401(k) retirement plan with employer match.
• Ample professional development opportunities and reimbursement.
• Company‑provided laptop and technology stipend.
• Hybrid work environment.

Starting annual base salary is $90,000 to $125,000 based on a 35‑hour work week for this non‑exempt position. Total compensation may increase with overtime pay and eligibility for various bonuses. A professional development reimbursement and technology stipend are also provided annually.

Applicants in need of special assistance or accommodation during the interview process or in accessing our website may contact us by email at  Please include your name and preferred method of contact in the email.

We are an equal‑opportunity employer and value diversity at our company. We do not discriminate on the basis of race, religion, color, national origin, gender, sexual orientation, age, marital status, veteran status, or disability status.