Data Scientist​/Curator

Bioinformatics NGS data Analyst (Contract)

Cambridge, MA, United States (On-site)

Contract (4 months 4 days)

Published 5 months ago

CLOSED

AWS

GCP

CWL

R

Bioinformatics

Mass Spectrometry

Python

Nextflow

proteomics

shell scripting

Data Scientist / Curator

Summary:

We are looking for a Data Scientist / Curator who will help annotate proteomics data at the MLCS. The contractor will apply proteomics related knowledge with bioinformatics skills to help curate and register high dimensional proteomics data into internal data registry. The deliverable will facilitate data processing, analysis, machine learning with high reproducibility and scalability, as well as data management and visualization.

Responsibilities:

• Annotate internal mass spec proteomics datasets to be compliant
• Register datasets into internal databases
• Transform and engineer datasets so they are ready for downstream analysis
• Extract, transform and load high value external datasets
• Document workflows and ensure data injection, metadata capture, versioning control and curation
• The deliverable will facilitate data processing, analysis, machine learning with high reproducibility and scalability, as well as data management and visualization.

Qualifications:

• B.S or advanced degree in Bioinformatics, Biology, Molecular Cell Biology, Biochemistry, Analytical Chemistry or related fields
• Familiarity with mass spectrometry based proteomics data type
• Wet-lab experience in Biology, Biochemistry, Molecular Biology, Analytical Chemistry or related field is strongly preferred
• Knowledge of relational or graph databases is preferred
• Experience in scripting languages like R/Python is desirable
• Familiarity with workflow languages (Nextflow, CWL, etc) is desirable
• Familiarity with shell scripting, cluster or cloud computing infrastructure (AWS, GCP) is desirable

Location:

• This is a fully onsite role in Cambridge, MA
• Monday - Friday; 40 hours per week

Please note contractors are engaged to provide services to Pfizer temporarily in connection with a specific assignment. Contractors are hired and employed through Atrium, our third-party payrolling partner.

This job posting is for a temporary role as an employee of Atrium on assignment  individual selected for this role will be offered the role as an employee of Atrium; compensation, medical benefits, fringe benefits, and other terms and conditions of employment shall be presented by Atrium upon offer. The pay rate range provided is a reasonable estimate of the anticipated compensation range for this job at the time of posting.

The actual pay rate will be based on several factors, including skills, competencies, experience, location and/or being pursued, and other job-related factors permitted by law. In addition, this role will be eligible for overtime pay, in accordance with federal and state requirements.

Pay Rate Range

Min Pay Rate $35

Max Pay Rate $40

Currency USD

Unit hourly

Benefits Information

Comprehensive Benefits Package available based on eligibility

• Short-Term Disability (STD)
• Long-Term Disability (LTD)
• Supplemental and Voluntary Life Insurance