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AI Engineer; Graphs and LLMs

Job in Boston, Suffolk County, Massachusetts, 02298, USA
Listing for: Bioscope
Full Time position
Listed on 2026-01-14
Job specializations:
  • IT/Tech
    Data Scientist, AI Engineer
Salary/Wage Range or Industry Benchmark: 150000 - 200000 USD Yearly USD 150000.00 200000.00 YEAR
Job Description & How to Apply Below
Position: AI Engineer (Graphs and LLMs)

What You'll Do

  • Develop Graph-Enhanced LLM Systems: Design and implement state-of-the-art architectures that combine Graph Neural Networks with Large Language Models to reason over complex networks of biomedical knowledge, literature, and clinical evidence

  • Build Clinical Knowledge Discovery Tools: Create AI-powered systems that enable physicians to rapidly synthesize insights from scientific literature, clinical trials, guidelines, and emerging research—transforming weeks of literature review into minutes of intelligent querying

  • Scientific Knowledge Graph Construction: Build and maintain dynamic knowledge graphs that capture relationships between medical concepts, research findings, clinical guidelines, drug interactions, and treatment protocols from millions of publications

  • Science of Science Applications: Apply bibliometric analysis, citation networks, and knowledge evolution modeling to identify emerging research trends, contradictory findings, and knowledge gaps in medical literature

  • Multi-Document Reasoning: Develop systems that perform sophisticated reasoning across thousands of research papers, synthesizing evidence, resolving contradictions, and providing confidence-weighted clinical insights

  • Production Systems: Deploy robust, scalable AI systems that handle real-time queries over massive biomedical knowledge bases with appropriate attention to accuracy, citation traceability, and clinical safety

Technical Focus Areas
  • Graph LLM architectures and graph-augmented language models

  • Knowledge graph construction, embedding, and reasoning

  • Citation networks and bibliographic analysis

  • Multi-hop reasoning over document graphs

  • Retrieval-Augmented Generation (RAG) over scientific literature

  • Named Entity Recognition and relation extraction from biomedical text

  • Evidence synthesis and contradiction detection

  • Semantic search and question-answering over medical knowledge bases

Qualifications Required
  • Master's degree in Computer Science, Machine Learning, Computational Biology, Information Science, or related quantitative field (PhD preferred)

  • 2+ years of hands‑on experience with LLMs and Knowledge Graphs (e.g., Graph‑RAG, LLM‑based knowledge graph reasoning, or similar architectures)

  • Strong foundation in deep learning frameworks (PyTorch)

  • Experience with Large Language Models (transformers, fine‑tuning, RAG systems)

  • Proficiency in Python and modern ML development tools

  • Experience putting AI systems into production environments

  • Strong understanding of NLP, information retrieval, and knowledge representation

  • Ability to read and implement research papers

  • Excellent communication skills and ability to work collaboratively

Preferred
  • Experience with
    graph databases
    .

  • Demonstrated experience in Science of Science or Knowledge Discovery (bibliometrics, citation analysis, research trend detection, or scholarly knowledge mining).

  • Publications in top‑tier ML/AI/IR conferences (NeurIPS, ICML, ACL, EMNLP,(Use the "Apply for this Job" box below). KDD, etc.)

  • Experience with biomedical literature databases (Pub Med, MEDLINE, clinical trial registries)

  • Background in biomedical NLP or clinical informatics

  • Experience with vector databases and semantic search systems

  • Familiarity with clinical decision support tools or medical information retrieval

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